The prehistoric peopling of Southeast Asia

Hugh McColl; Fernando Racimo; Lasse Vinner; Fabrice Demeter; Takashi Gakuhari; J. Víctor Moreno-Mayar; George Van Driem; Uffe Gram Wilken; Andaine Seguin-Orlando; Constanza De la Fuente Castro; Sally Wasef; Rasmi Shoocongdej; Viengkeo Souksavatdy; Thongsa Sayavongkhamdy; Mohd Mokhtar Saidin; Morten E. Allentoft; Takehiro Sato; Anna Sapfo Malaspinas; Farhang A. Aghakhanian; Thorfinn Korneliussen; Ana Prohaska; Ashot Margaryan; Peter De Barros Damgaard; Supannee Kaewsutthi; Patcharee Lertrit; Thi Mai Huong Nguyen; Hsiao chun Hung; Thi Minh Tran; Huu Nghia Truong; Giang Hai Nguyen; Shaiful Shahidan; Ketut Wiradnyana; Hiromi Matsumae; Nobuo Shigehara; Minoru Yoneda; Hajime Ishida; Tadayuki Masuyama; Yasuhiro Yamada; Atsushi Tajima; Hiroki Shibata; Atsushi Toyoda; Tsunehiko Hanihara; Shigeki Nakagome; Thibaut Deviese; Anne Marie Bacon; Philippe Duringer; Jean Luc Ponche; Laura Shackelford; Elise Patole-Edoumba; Anh Tuan Nguyen; Bérénice Bellina-Pryce; Jean Christophe Galipaud; Rebecca Kinaston; Hallie Buckley; Christophe Pottier; Simon Rasmussen; Tom Higham; Robert A. Foley; Marta Mirazón Lahr; Ludovic Orlando; Martin Sikora; Maude E. Phipps; Hiroki Oota; Charles Higham; David M. Lambert; Eske Willerslev

doi:10.1126/science.aat3628

The prehistoric peopling of Southeast Asia

Hugh McColl
, Fernando Racimo
, Lasse Vinner
, Fabrice Demeter
, Takashi Gakuhari
, J. Víctor Moreno-Mayar
, George Van Driem
, Uffe Gram Wilken
, Andaine Seguin-Orlando
, Constanza De la Fuente Castro
, Sally Wasef
, Rasmi Shoocongdej
, Viengkeo Souksavatdy
, Thongsa Sayavongkhamdy
, Mohd Mokhtar Saidin
, Morten E. Allentoft
, Takehiro Sato
, Anna Sapfo Malaspinas
, Farhang A. Aghakhanian
, Thorfinn Korneliussen

Ana Prohaska, Ashot Margaryan, Peter De Barros Damgaard, Supannee Kaewsutthi, Patcharee Lertrit, Thi Mai Huong Nguyen, Hsiao chun Hung, Thi Minh Tran, Huu Nghia Truong, Giang Hai Nguyen, Shaiful Shahidan, Ketut Wiradnyana, Hiromi Matsumae, Nobuo Shigehara, Minoru Yoneda, Hajime Ishida, Tadayuki Masuyama, Yasuhiro Yamada, Atsushi Tajima, Hiroki Shibata, Atsushi Toyoda, Tsunehiko Hanihara, Shigeki Nakagome, Thibaut Deviese, Anne Marie Bacon, Philippe Duringer, Jean Luc Ponche, Laura Shackelford, Elise Patole-Edoumba, Anh Tuan Nguyen, Bérénice Bellina-Pryce, Jean Christophe Galipaud, Rebecca Kinaston, Hallie Buckley, Christophe Pottier, Simon Rasmussen, Tom Higham, Robert A. Foley, Marta Mirazón Lahr, Ludovic Orlando, Martin Sikora, Maude E. Phipps, Hiroki Oota, Charles Higham, David M. Lambert, Eske Willerslev

Department of Biochemistry

Natural History Museum of Denmark
Muséum National d'Histoire Naturelle
Kanazawa University
Kitasato University School of Medicine
University of Bern
University of New England Australia
Université de Toulouse
Griffith University
Silpakorn University
Ministry of Information
University Science Malaysia
University of Lausanne
Monash University Malaysia
University of Cambridge
National Academy of Sciences of the Republic of Armenia
Siriraj Hospital
Institute of Archaeology
Australian National University
Balai Archeology
Nara National Research Institute for Cultural Properties
University of Tokyo
University of the Ryukyus
Educational Committee of Tahara City
National Museum of Japanese History
Kyushu University
National Institute of Genetics Mishima
School of Medicine, Trinity College Dublin
Oxford University Clinical Academic Graduate School
Universite Paris Cite
University of Strasbourg
Institut de Physique du Globe de Strasbourg (IPGS) (CNRS/UDS UMR 7516)
Université de Strasbourg
National Center for Supercomputing Applications
Natural History Museum of La Rochelle
CNRS Centre National de la Recherche Scientifique
School of Biomedical Sciences
Max Planck Institute for the Science of Human History
École Française d’Extrême-Orient
Technical University of Denmark
University of Otago
Wellcome Trust Sanger Institute

Research output: Contribution to journal › Article › peer-review

354 Citations (Scopus)

Abstract

The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the “two-layer” hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.

Original language	English
Pages (from-to)	88-92
Number of pages	5
Journal	Science
Volume	361
Issue number	6397
DOIs	https://doi.org/10.1126/science.aat3628
Publication status	Published - 6 Jul 2018

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McColl, H., Racimo, F., Vinner, L., Demeter, F., Gakuhari, T., Víctor Moreno-Mayar, J., Van Driem, G., Wilken, U. G., Seguin-Orlando, A., De la Fuente Castro, C., Wasef, S., Shoocongdej, R., Souksavatdy, V., Sayavongkhamdy, T., Saidin, M. M., Allentoft, M. E., Sato, T., Malaspinas, A. S., Aghakhanian, F. A., ... Willerslev, E. (2018). The prehistoric peopling of Southeast Asia. Science, 361(6397), 88-92. https://doi.org/10.1126/science.aat3628

@article{76c77d7fdc1e4188869d92fb4065b98b,

title = "The prehistoric peopling of Southeast Asia",

abstract = "The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by H{\`o}ab{\`i}nhian hunter-gatherers until \textasciitilde{}4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the {\textquotedblleft}two-layer{\textquotedblright} hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both H{\`o}ab{\`i}nhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.",

author = "Hugh McColl and Fernando Racimo and Lasse Vinner and Fabrice Demeter and Takashi Gakuhari and \{V{\'i}ctor Moreno-Mayar\}, J. and \{Van Driem\}, George and Wilken, \{Uffe Gram\} and Andaine Seguin-Orlando and \{De la Fuente Castro\}, Constanza and Sally Wasef and Rasmi Shoocongdej and Viengkeo Souksavatdy and Thongsa Sayavongkhamdy and Saidin, \{Mohd Mokhtar\} and Allentoft, \{Morten E.\} and Takehiro Sato and Malaspinas, \{Anna Sapfo\} and Aghakhanian, \{Farhang A.\} and Thorfinn Korneliussen and Ana Prohaska and Ashot Margaryan and \{De Barros Damgaard\}, Peter and Supannee Kaewsutthi and Patcharee Lertrit and Nguyen, \{Thi Mai Huong\} and Hung, \{Hsiao chun\} and Tran, \{Thi Minh\} and Truong, \{Huu Nghia\} and Nguyen, \{Giang Hai\} and Shaiful Shahidan and Ketut Wiradnyana and Hiromi Matsumae and Nobuo Shigehara and Minoru Yoneda and Hajime Ishida and Tadayuki Masuyama and Yasuhiro Yamada and Atsushi Tajima and Hiroki Shibata and Atsushi Toyoda and Tsunehiko Hanihara and Shigeki Nakagome and Thibaut Deviese and Bacon, \{Anne Marie\} and Philippe Duringer and Ponche, \{Jean Luc\} and Laura Shackelford and Elise Patole-Edoumba and Nguyen, \{Anh Tuan\} and B{\'e}r{\'e}nice Bellina-Pryce and Galipaud, \{Jean Christophe\} and Rebecca Kinaston and Hallie Buckley and Christophe Pottier and Simon Rasmussen and Tom Higham and Foley, \{Robert A.\} and Lahr, \{Marta Miraz{\'o}n\} and Ludovic Orlando and Martin Sikora and Phipps, \{Maude E.\} and Hiroki Oota and Charles Higham and Lambert, \{David M.\} and Eske Willerslev",

note = "Publisher Copyright: {\textcopyright} The Authors.",

year = "2018",

month = jul,

day = "6",

doi = "10.1126/science.aat3628",

language = "English",

volume = "361",

pages = "88--92",

journal = "Science",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science",

number = "6397",

}

McColl, H, Racimo, F, Vinner, L, Demeter, F, Gakuhari, T, Víctor Moreno-Mayar, J, Van Driem, G, Wilken, UG, Seguin-Orlando, A, De la Fuente Castro, C, Wasef, S, Shoocongdej, R, Souksavatdy, V, Sayavongkhamdy, T, Saidin, MM, Allentoft, ME, Sato, T, Malaspinas, AS, Aghakhanian, FA, Korneliussen, T, Prohaska, A, Margaryan, A, De Barros Damgaard, P, Kaewsutthi, S, Lertrit, P, Nguyen, TMH, Hung, HC, Tran, TM, Truong, HN, Nguyen, GH, Shahidan, S, Wiradnyana, K, Matsumae, H, Shigehara, N, Yoneda, M, Ishida, H, Masuyama, T, Yamada, Y, Tajima, A, Shibata, H, Toyoda, A, Hanihara, T, Nakagome, S, Deviese, T, Bacon, AM, Duringer, P, Ponche, JL, Shackelford, L, Patole-Edoumba, E, Nguyen, AT, Bellina-Pryce, B, Galipaud, JC, Kinaston, R, Buckley, H, Pottier, C, Rasmussen, S, Higham, T, Foley, RA, Lahr, MM, Orlando, L, Sikora, M, Phipps, ME, Oota, H, Higham, C, Lambert, DM & Willerslev, E 2018, 'The prehistoric peopling of Southeast Asia', Science, vol. 361, no. 6397, pp. 88-92. https://doi.org/10.1126/science.aat3628

TY - JOUR

T1 - The prehistoric peopling of Southeast Asia

AU - McColl, Hugh

AU - Racimo, Fernando

AU - Vinner, Lasse

AU - Demeter, Fabrice

AU - Gakuhari, Takashi

AU - Víctor Moreno-Mayar, J.

AU - Van Driem, George

AU - Wilken, Uffe Gram

AU - Seguin-Orlando, Andaine

AU - De la Fuente Castro, Constanza

AU - Wasef, Sally

AU - Shoocongdej, Rasmi

AU - Souksavatdy, Viengkeo

AU - Sayavongkhamdy, Thongsa

AU - Saidin, Mohd Mokhtar

AU - Allentoft, Morten E.

AU - Sato, Takehiro

AU - Malaspinas, Anna Sapfo

AU - Aghakhanian, Farhang A.

AU - Korneliussen, Thorfinn

AU - Prohaska, Ana

AU - Margaryan, Ashot

AU - De Barros Damgaard, Peter

AU - Kaewsutthi, Supannee

AU - Lertrit, Patcharee

AU - Nguyen, Thi Mai Huong

AU - Hung, Hsiao chun

AU - Tran, Thi Minh

AU - Truong, Huu Nghia

AU - Nguyen, Giang Hai

AU - Shahidan, Shaiful

AU - Wiradnyana, Ketut

AU - Matsumae, Hiromi

AU - Shigehara, Nobuo

AU - Yoneda, Minoru

AU - Ishida, Hajime

AU - Masuyama, Tadayuki

AU - Yamada, Yasuhiro

AU - Tajima, Atsushi

AU - Shibata, Hiroki

AU - Toyoda, Atsushi

AU - Hanihara, Tsunehiko

AU - Nakagome, Shigeki

AU - Deviese, Thibaut

AU - Bacon, Anne Marie

AU - Duringer, Philippe

AU - Ponche, Jean Luc

AU - Shackelford, Laura

AU - Patole-Edoumba, Elise

AU - Nguyen, Anh Tuan

AU - Bellina-Pryce, Bérénice

AU - Galipaud, Jean Christophe

AU - Kinaston, Rebecca

AU - Buckley, Hallie

AU - Pottier, Christophe

AU - Rasmussen, Simon

AU - Higham, Tom

AU - Foley, Robert A.

AU - Lahr, Marta Mirazón

AU - Orlando, Ludovic

AU - Sikora, Martin

AU - Phipps, Maude E.

AU - Oota, Hiroki

AU - Higham, Charles

AU - Lambert, David M.

AU - Willerslev, Eske

PY - 2018/7/6

Y1 - 2018/7/6

N2 - The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the “two-layer” hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.

AB - The human occupation history of Southeast Asia (SEA) remains heavily debated. Current evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until ~4000 years ago, when farming economies developed and expanded, restricting foraging groups to remote habitats. Some argue that agricultural development was indigenous; others favor the “two-layer” hypothesis that posits a southward expansion of farmers giving rise to present-day Southeast Asian genetic diversity. By sequencing 26 ancient human genomes (25 from SEA, 1 Japanese Jōmon), we show that neither interpretation fits the complexity of Southeast Asian history: Both Hòabìnhian hunter-gatherers and East Asian farmers contributed to current Southeast Asian diversity, with further migrations affecting island SEA and Vietnam. Our results help resolve one of the long-standing controversies in Southeast Asian prehistory.

UR - https://www.scopus.com/pages/publications/85049645767

U2 - 10.1126/science.aat3628

DO - 10.1126/science.aat3628

M3 - Article

C2 - 29976827

AN - SCOPUS:85049645767

SN - 0036-8075

VL - 361

SP - 88

EP - 92

JO - Science

JF - Science

IS - 6397

ER -

The prehistoric peopling of Southeast Asia

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