Data integration framework of pharmacology databases using ontology

Phimphan Thipphayasaeng; Poonpong Boonbrahm; Marut Buranarach; Anunchai Assawamakin

Data integration framework of pharmacology databases using ontology

Phimphan Thipphayasaeng
, Poonpong Boonbrahm
, Marut Buranarach
, Anunchai Assawamakin

Department of Pharmacology

Walailak University
National Electronics and Computer Technology Center

Research output: Contribution to journal › Conference article › peer-review

Abstract

This paper presents linked data of pharmacology domain generated with ontology as central schema. To link data from several formats, data are transformed into database format, and they are mapped to ontology. The ontology is developed with concepts provided in the dataset. Mainly, the developed ontol-ogy contains a concept of drug, disease, genetic and drug-gene interaction with their details. The ontology is used as central schema to link concepts together; thus, linked data are created. Within the linked data, we found three types of links, i.e. addition of instances, addition of attributes and changing of variable data field to a link to another table. In this paper, actual scenarios of the found links with exemplified data are explained.

Original language	English
Pages (from-to)	40-45
Number of pages	6
Journal	CEUR Workshop Proceedings
Volume	1741
Publication status	Published - 2016
Event	6th Joint International Semantic Technology Conference on Workshop and Poster, JIST-WP 2016 - Singapore, Singapore Duration: 2 Nov 2016 → 4 Nov 2016

Keywords

Data integration
Linked data
Ontology
Pharmacological data

Cite this

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title = "Data integration framework of pharmacology databases using ontology",

abstract = "This paper presents linked data of pharmacology domain generated with ontology as central schema. To link data from several formats, data are transformed into database format, and they are mapped to ontology. The ontology is developed with concepts provided in the dataset. Mainly, the developed ontol-ogy contains a concept of drug, disease, genetic and drug-gene interaction with their details. The ontology is used as central schema to link concepts together; thus, linked data are created. Within the linked data, we found three types of links, i.e. addition of instances, addition of attributes and changing of variable data field to a link to another table. In this paper, actual scenarios of the found links with exemplified data are explained.",

keywords = "Data integration, Linked data, Ontology, Pharmacological data",

author = "Phimphan Thipphayasaeng and Poonpong Boonbrahm and Marut Buranarach and Anunchai Assawamakin",

year = "2016",

language = "English",

volume = "1741",

pages = "40--45",

journal = "CEUR Workshop Proceedings",

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note = "6th Joint International Semantic Technology Conference on Workshop and Poster, JIST-WP 2016 ; Conference date: 02-11-2016 Through 04-11-2016",

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TY - JOUR

T1 - Data integration framework of pharmacology databases using ontology

AU - Thipphayasaeng, Phimphan

AU - Boonbrahm, Poonpong

AU - Buranarach, Marut

AU - Assawamakin, Anunchai

PY - 2016

Y1 - 2016

N2 - This paper presents linked data of pharmacology domain generated with ontology as central schema. To link data from several formats, data are transformed into database format, and they are mapped to ontology. The ontology is developed with concepts provided in the dataset. Mainly, the developed ontol-ogy contains a concept of drug, disease, genetic and drug-gene interaction with their details. The ontology is used as central schema to link concepts together; thus, linked data are created. Within the linked data, we found three types of links, i.e. addition of instances, addition of attributes and changing of variable data field to a link to another table. In this paper, actual scenarios of the found links with exemplified data are explained.

AB - This paper presents linked data of pharmacology domain generated with ontology as central schema. To link data from several formats, data are transformed into database format, and they are mapped to ontology. The ontology is developed with concepts provided in the dataset. Mainly, the developed ontol-ogy contains a concept of drug, disease, genetic and drug-gene interaction with their details. The ontology is used as central schema to link concepts together; thus, linked data are created. Within the linked data, we found three types of links, i.e. addition of instances, addition of attributes and changing of variable data field to a link to another table. In this paper, actual scenarios of the found links with exemplified data are explained.

KW - Data integration

KW - Linked data

KW - Ontology

KW - Pharmacological data

UR - https://www.scopus.com/pages/publications/85006147331

M3 - Conference article

AN - SCOPUS:85006147331

SN - 1613-0073

VL - 1741

SP - 40

EP - 45

JO - CEUR Workshop Proceedings

JF - CEUR Workshop Proceedings

T2 - 6th Joint International Semantic Technology Conference on Workshop and Poster, JIST-WP 2016

Y2 - 2 November 2016 through 4 November 2016

ER -

Data integration framework of pharmacology databases using ontology

Abstract

Keywords

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